PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G266200.1
Common NameB456_009G266200, LOC105770102
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 148aa    MW: 16096 Da    PI: 7.415
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G266200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.32.6e-151261255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                        +ykGVr+++ +g+Wv eIr+p     +  r +lg++ t+e Aa a++ a  +l+ 
  Gorai.009G266200.1 12 KYKGVRRRR-WGKWVTEIRVPG----TeGRLWLGSYSTPEAAAVAHDIAFYCLRR 61
                        8*****777.**********83....359********************999885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.3E-241172IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-161271IPR016177DNA-binding domain
CDDcd000184.81E-241271No hitNo description
SMARTSM003804.1E-251277IPR001471AP2/ERF domain
PfamPF008473.2E-81260IPR001471AP2/ERF domain
PROSITE profilePS5103221.181271IPR001471AP2/ERF domain
PRINTSPR003672.5E-81324IPR001471AP2/ERF domain
PRINTSPR003672.5E-83551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MSADGSSADQ RKYKGVRRRR WGKWVTEIRV PGTEGRLWLG SYSTPEAAAV AHDIAFYCLR  60
RPSSLTALNF PSMLPPHVNS NMSPKSVQKA ASDAGMAVDA QMILVDSPMN DEIKANTNDG  120
SSCGGGSWER SEGRERETLS ISIEDYL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5792532e-64JX579253.1 Gossypium hirsutum clone NBRI_GE11456 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012446611.11e-106PREDICTED: ethylene-responsive transcription factor ERF020
SwissprotQ9C9I83e-50ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLA0A0D2QNP81e-106A0A0D2QNP8_G
STRINGPOPTR_0013s10420.14e-54(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-49ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]